Publikatsioonid
Siit leiad valiku MMC liikmete hiljutisi publikatsioone:
Bahram, M., Espenberg, M., Pärn, J., Lehtovirta-Morley, L., Anslan, S., Kasak, K., Kõljalg, U., Liira, J., Maddison, M., Moora, M., Niinemets, Ü., Öpik, M., Pärtel, M., Soosaar, K., Zobel, M., Hildebrand, F., Tedersoo, L., & Mander, Ü. (2022). Structure and function of the soil microbiome underlying N2O emissions from global wetlands. Nature Communications, 13, article 1430.
Aslani, F., Geisen, S., Ning, D., Tedersoo, L., & Bahram, M. (2022). Towards revealing the global diversity and community assembly of soil eukaryotes. Ecology Letters, 25(1), 65-76.
Mikryukov, V. S., Dulya, O. V., Bergman, I. E., Lihodeevskiy, G. A., Loginova, A. D., & Tedersoo, L. (2021). Sheltering role of well-decayed conifer logs for forest floor fungi in long-term polluted boreal forests. Frontiers in Microbiology, 12, article 729244.
Põlme, S., Abarenkov, K., Nilsson, R. H., Lindahl, B. D., Engelbrecht Clemmensen, K., Kauserud, H., Nguyen, N., Kjøller, R., Bates, S. T., Baldrian, P., Guldberg Frøslev, T., Adojaan, K., Vizzini, A., Suija, A., Pfister, D., Baral, H. O., Järv, H., Madrid, H., Nordén, J., & Tedersoo, L. (2020). FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles. Fungal Diversity, 105, 1-16.
Soudzilovskaia, N. A., Vaessen, S., Barcelo, M., He, J., Rahimlou, S., Abarenkov, K., Brundrett, M. C., Gomes, S. I. F., Merckx, V., & Tedersoo, L. (2020). FungalRoot: global online database of plant mycorrhizal associations. New Phytologist, 220(3), 955-966.
Tedersoo, L., Bahram, M., Zobel, M. (2020). How mycorrhizal associations drive plant population and community biology. Science, 367(6480).
Loit, K., Adamson, K., Bahram, M., Puusepp, R., Anslan, S., Kiiker, R., Drenkhan, R., & Tedersoo, L. (2019). Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens. Applied and Environmental Microbiology, 85(21), e01368-19.
Nilsson, R. H., Anslan, S., Bahram, M., Wurzbacher, C., Baldrian, P., Tedersoo, L. (2019). Mycobiome diversity: high-throughput sequencing and identification of fungi. Nature Reviews Microbiology, 17(2), 95-109.
Soudzilovskaia, N. A., van Bodegom, P. M., Terrer, C., van’t Zelfde, M., McCallum, I., McCormack, M. L., Fisher, J. B., Brundrett, M. C., de Sá, N. C., Tedersoo, L. (2019). Global mycorrhizal plant distribution linked to terrestrial carbon stocks. Nature Communications, 10(1), 1-10.
Tedersoo, L., & Bahram, M. (2019). Mycorrhizal types differ in ecophysiology and alter plant nutrition and soil processes. Biological Reviews, 94(5), 1857–1880.
Anslan, S., Nilsson, R. H., Wurzbacher, C., Baldrian, P., Tedersoo, L., & Bahram, M. (2018). Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. MycoKeys, 39, 29-40.
Bahram M., Hildebrand, F., Forslund, S. K., Anderson, J. L., Soudzilovskaia, N. A., Bodegom, P. M., Bengtsson-Palme, J., Anslan, S., Coelho, L. P., Harend, H., Huerta-Cepas, J., Medema, M. H., Maltz, M. R., Mundra, S., Olsson, P. A., Pent, M., Põlme, S., Sunagawa, S., Ryberg, M., Tedersoo, L., Bork, P. (2018). Structure and function of the global topsoil microbiome. Nature, 560(7717), 233-237.
Brundrett, M., & Tedersoo, L. (2018). Evolutionary history of mycorrhizal symbioses and global host plant diversity. New Phytologist, 220(4), 1108-1115.
Põlme, S., Bahram, M., Jacquemyn, H., Kennedy, P., Kohout, P., Moora, M., Oja, J., Öpik, M., Pecoraro, L., & Tedersoo, L. (2018). Host preference and network properties in biotrophic plant–fungal associations. New Phytologist, 217(3), 1230-1239.
Pärn, J., Verhoeven, J. T., Butterbach-Bahl, K., Dise, N. B., Ullah, S., Aasa, A., Egorov, S., Espenberg, M., Järveoja, J., Jauhiainen, J., Kasak, K., Klemedtsson, L., Kull, A., Laggoun-Défarge, F., Lapshina, E. D., Lohila, A., Lõhmus, K., Maddison, M., Mitsch,… Mander, Ü. (2018). Nitrogen-rich organic soils under warm well-drained conditions are global nitrous oxide emission hotspots. Nature Communications, 9(1), 1-8.
Anslan, S., Bahram, M., Hiiesalu, I., & Tedersoo, L. (2017). PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data. Molecular Ecology Resources, 17(6), e234-e240.
Tedersoo, L., Bahram, M., Põlme, S., Kõljalg, U., Yorou, N. S., Wijesundera, R., Ruiz, L. V., Vasco-Palacios, A. M., Thu, P. Q., Suija, A., Smith, M. E., Sharp, C., Saluveer, E., Saitta, A., Rosas, M., Riit, T., Ratkowsky, D., Pritsch, K., Põldmaa, … Abarenkov, K. (2014). Global diversity and geography of soil fungi. Science, 346(6213).
Hakimzadeh, A., ASbun, A.A., Albanese, D., Bernard, M., Bucnher, D., Callahan, B., Caporaso, J.G., Curd, E., Djemel, C., Durling, M.B., Elbrecht, V. Gold, Z., Gweon, H.S., Hajibabei, M., Hildebrand, F., Mikryukov, V., Normandeau, E., Özkurt, E., Palmer, J.M., Pascal, G., Porter, G.P., Straub, D., Vasar, M., Větrovský, T., Zafeiropoulos, H., Anslan, S. (2023). A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses. Molecular Ecology Resources.
Mikryukov, V., Dulya, O., Zizka, A., Bahram, M., Hagh-Doust, N., Anslan, S., Prylutskyi, O., Delgado-Baquerizo, M., Maestre, F.T., Nilsson, H., Pärn, J., Öpik, M., Moora, M., Zobel, M., Espenberg, M., Mander, Ü., Khalid, A.N., Corrales, A., Agan, A., Vasco-Palacios, A.-M., Saitta, A., Rinaldi, A., Verbeken, A., Sulistyo, B., Tamgnoue, B., Furneaux, B., Duarte Ritter, C., Nyamukondiwa, C., Sharp, C., Marín, C., Gohar, D., Klavina, D., Sharmah, D., Dai, D.-Q., Nouhra, E., Biersma, E.M., Rähn, E., Cameron, E., De Crop, E., Otsing, E., Davydov, E., Albornoz, F., Brearley, F., Buegger, F., Zahn, G., Bonito, G., Hiiesalu, I., Barrio, I., Heilmann-Clausen, J., Ankuda, J., Doležal, J., Kupagme, J., Maciá-Vicente, J., Djeugap Fovo, J., Geml, J., Alatalo, J., Alvarez-Manjarrez, J., Põldmaa, K., Runnel, K., Adamson, K., Bråthen, K.-A., Pritsch, K., Tchan Issifou, K., Armolaitis, K., Hyde, K., Newsham, K.K., Panksep, K., Lateef, A.A., Hansson, L., Lamit, L., Saba, M., Tuomi, M., Gryzenhout, M., Bauters, M., Piepenbring, M., Wijayawardene, N.N., Yorou, N., Kurina, O., Mortimer, P., Meidl, P., Kohout, P., Puusepp, R., Drenkhan, R., Garibay-Orijel, R., Godoy, R., Alkahtani, S., Rahimlou, S., Dudov, S., Põlme, S., Ghosh, S., Mundra, S., Ahmed, T., Netherway, T., Henkel, T., Roslin, T., Nteziryayo, V., Fedosov, V., Onipchenko, V., Yasanthika, W.A.E., Lim, Y., Van Nuland, M., Soudzilovskaia, N., Antonelli, A., Kõljalg, U., Abarenkov, K., Tedersoo, L., 2023. Connecting the multiple dimensions of global soil fungal diversity. Science Advances 9, eadj8016.
Tedersoo, L., Mikryukov, V., Zizka, A., Bahram, M., Hagh-Doust, N., Anslan, S., Prylutskyi, O., Delgado-Baquerizo, M., Maestre, F.T., Pärn, J., Öpik, M., Moora, M., Zobel, M., Espenberg, M., Mander, Ü., Khalid, A.N., Corrales, A., Agan, A., Vasco-Palacios, A.-M., Saitta, A., Rinaldi, A.C., Verbeken, A., Sulistyo, B.P., Tamgnoue, B., Furneaux, B., Ritter, C.D., Nyamukondiwa, C., Sharp, C., Marín, C., Gohar, D., Klavina, D., Sharmah, D., Dai, D.Q., Nouhra, E., Biersma, E.M., Rähn, E., Cameron, E.K., De Crop, E., Otsing, E., Davydov, E.A., Albornoz, F.E., Brearley, F.Q., Buegger, F., Zahn, G., Bonito, G., Hiiesalu, I., Barrio, I.C., Heilmann-Clausen, J., Ankuda, J., Kupagme, J.Y., Maciá-Vicente, J.G., Fovo, J.D., Geml, J., Alatalo, J.M., Alvarez-Manjarrez, J., Põldmaa, K., Runnel, K., Adamson, K., Bråthen, K.A., Pritsch, K., Tchan, K.I., Armolaitis, K., Hyde, K.D., Newsham, K.K., Panksep, K., Lateef, A.A., Tiirmann, L., Hansson, L., Lamit, L.J., Saba, M., Tuomi, M., Gryzenhout, M., Bauters, M., Piepenbring, M., Wijayawardene, N., Yorou, N.S., Kurina, O., Mortimer, P.E., Meidl, P., Kohout, P., Nilsson, R.H., Puusepp, R., Drenkhan, R., Garibay-Orijel, R., Godoy, R., Alkahtani, S., Rahimlou, S., Dudov, S.V., Põlme, S., Ghosh, S., Mundra, S., Ahmed, T., Netherway, T., Henkel, T.W., Roslin, T., Nteziryayo, V., Fedosov, V.E., Onipchenko, V.G., Yasanthika, W.A.E., Lim, Y.W., Soudzilovskaia, N.A., Antonelli, A., Kõljalg, U., Abarenkov, K., 2022. Global patterns in endemicity and vulnerability of soil fungi. Global Change Biology 28, 6696–6710.
Tedersoo, L., Bahram, M., Zinger, L., Nilsson, R.H., Kennedy, P.G., Yang, T., Anslan, S., Mikryukov, V., 2022. Best practices in metabarcoding of fungi: From experimental design to results. Molecular Ecology 31, 2769–2795.
