PUBLIKATSIOONID
2024
Ribosomal RNA modification enzymes stimulate large ribosome subunit assembly in E. coli
Ero R, Leppik M, Reier K, Liiv A, Remme J.
Nucleic Acids Res. 2024 Jun 24;52(11):6614-6628.
doi: 10.1093/nar/gkae222.
SILAC analysis of Escherichia coli proteome during progression of growth from exponential to prolonged stationary phase
Reier K, Liiv A, Remme J.
Microbiol Resour Announc. 2024 Jun 11;13(6):e0004224.
doi: 10.1128/mra.00042-24.
Loss of Conserved rRNA Modifications in the Peptidyl Transferase Center Leads to Diminished Protein Synthesis and Cell Growth in Budding Yeast
Leppik M, Pomerants L, Põldes A, Mihkelson P, Remme J, Tamm T.
Int J Mol Sci. 2024 May 10;25(10):5194.
doi: 10.3390/ijms25105194.
Richness of yeast community associated with apple fruits in Estonia
Kristjuhan A, Kristjuhan K, Tamm T.
Heliyon. 2024 Mar 14;10(6):e27885.
doi: 10.1016/j.heliyon.2024.e27885.
Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre
Bao L, Liljeruhm J, Crespo Blanco R, Brandis G, Remme J, Forster AC.
RNA Biology 21, 31-41.
doi: 10.1080/15476286.2024.2368305
2023
Ribosome Protein Composition Mediates Translation during the Escherichia coli Stationary Phase
Reier K, Liiv A, Remme J.
Int J Mol Sci. 2023 Feb 4;24(4):3128.
doi: 10.3390/ijms24043128.
Archaea/eukaryote-specific ribosomal proteins – guardians of a complex structure
Kisly I, Tamm T.
Comput Struct Biotechnol J. 2023 Jan 27;21:1249-1261.
doi: 10.1016/j.csbj.2023.01.037.
2022
A Conundrum of r-Protein Stability: Unbalanced Stoichiometry of r-Proteins during Stationary Phase in Escherichia coli
Reier K, Lahtvee PJ, Liiv A, Remme J.
mBio. 2022 Oct 26;13(5):e0187322.
doi: 10.1128/mbio.01873-22.
Plasticity and conditional essentiality of modification enzymes for domain V of Escherichia coli 23S ribosomal RNA
Liljeruhm J, Leppik M, Bao L, Truu T, Calvo-Noriega M, Freyer NS, Liiv A, Wang J, Blanco RC, Ero R, Remme J, Forster AC.
RNA. 2022 Jun;28(6):796-807.
doi: 10.1261/rna.079096.121.
Variance in translational fidelity of different bacterial species is affected by pseudouridines in the tRNA anticodon stem-loop
Jürgenstein K, Tagel M, Ilves H, Leppik M, Kivisaar M, Remme J.
RNA Biol. 2022 Jan;19(1):1050-1058.
doi: 10.1080/15476286.2022.2121447.
2021
A mutation in the ribosomal protein uS12 reveals novel functions of its universally conserved PNSA loop
Datta M, Pillai M, Modak MJ, Liiv A, Khaja FT, Hussain T, Remme J, Varshney U.
Mol Microbiol. 2021 Jun;115(6):1292-1308.
doi: 10.1111/mmi.14675.
Luciferase-based reporter system for in vitro evaluation of elongation rate and processivity of ribosomes
Kisly I, Kattel C, Remme J, Tamm T.
Nucleic Acids Res. 2021 Jun 4;49(10):e59.
doi: 10.1093/nar/gkab121.
2020
Pseudouridines of tRNA Anticodon Stem-Loop Have Unexpected Role in Mutagenesis in Pseudomonas sp
Tagel M, Ilves H, Leppik M, Jürgenstein K, Remme J, Kivisaar M.
Microorganisms. 2020 Dec 23;9(1):25.
doi: 10.3390/microorganisms9010025.
Phenotypic effects of paralogous ribosomal proteins bL31A and bL31B in E. coli
Lilleorg S, Reier K, Volõnkin P, Remme J, Liiv A.
Sci Rep. 2020 Jul 15;10(1):11682.
doi: 10.1038/s41598-020-68582-2.
Ribosome engineering reveals the importance of 5S rRNA autonomy for ribosome assembly
Huang S, Aleksashin NA, Loveland AB, Klepacki D, Reier K, Kefi A, Szal T, Remme J, Jaeger L, Vázquez-Laslop N, Korostelev AA, Mankin AS.
Nat Commun. 2020 Jun 9;11(1):2900.
doi: 10.1038/s41467-020-16694-8.
2019
Functional Interactions of Ribosomal Intersubunit Bridges in Saccharomyces cerevisiae
Tamm T, Kisly I, Remme J.
Genetics. 2019 Dec;213(4):1329-1339.
doi: 10.1534/genetics.119.302777.
Assembly and functionality of the ribosome with tethered subunits.
Aleksashin NA, Leppik M, Hockenberry AJ, Klepacki D, Vázquez-Laslop N, Jewett MC, Remme J, Mankin AS.
Nat Commun. 2019 Feb 25;10(1):930.
doi: 10.1038/s41467-019-08892-w.
Pseudomonas putida Responds to the Toxin GraT by Inducing Ribosome Biogenesis Factors and Repressing TCA Cycle Enzymes.
Ainelo A, Porosk R, Kilk K, Rosendahl S, Remme J, Hõrak R.
Toxins (Basel). 2019 Feb 9;11(2). pii: E103.
doi: 10.3390/toxins11020103.
Ribosomal protein eL24, involved in two intersubunit bridges, stimulates translation initiation and elongation.
Kisly I, Remme J, Tamm T.
Nucleic Acids Res. 2019 Jan 10;47(1):406-420.
doi: 10.1093/nar/gky1083.
Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase.
Lilleorg S, Reier K, Pulk A, Liiv A, Tammsalu T, Peil L, Cate JHD, Remme J.
Biochimie. 2019 Jan;156:169-180.
doi: 10.1016/j.biochi.2018.10.013.
2018
Pseudouridine-Free Escherichia coli Ribosomes.
O’Connor M, Leppik M, Remme J.
J Bacteriol. 2018 Jan 24;200(4).
doi: 10.1128/JB.00540-17.
2017
Random pseuoduridylation in vivo reveals critical region of Escherichia coli 23S rRNA for ribosome assembly.
Leppik M, Liiv A, Remme J.
Nucleic Acids Res. 2017 Jun 2;45(10):6098-6108.
doi: 10.1093/nar/gkx160.
The Intersubunit Bridge B1b of the Bacterial Ribosome Facilitates Initiation of Protein Synthesis and Maintenance of Translational Fidelity.
Lilleorg S, Reier K, Remme J, Liiv A.
J Mol Biol. 2017 Apr 7;429(7):1067-1080.
doi: 10.1016/j.jmb.2017.02.015.
Toxins MazF and MqsR cleave Escherichia coli rRNA precursors at multiple sites.
Mets T, Lippus M, Schryer D, Liiv A, Kasari V, Paier A, Maiväli Ü, Remme J, Tenson T, Kaldalu N.
RNA Biol. 2017 Jan 2;14(1):124-135.
doi: 10.1080/15476286.2016.1259784.
2016
The Functional Role of eL19 and eB12 Intersubunit Bridge in the Eukaryotic Ribosome.
Kisly I, Gulay SP, Mäeorg U, Dinman JD, Remme J, Tamm T.
J Mol Biol. 2016 May 22;428(10 Pt B):2203-16.
doi: 10.1016/j.jmb.2016.03.023.
The toxin GraT inhibits ribosome biogenesis.
Ainelo A, Tamman H, Leppik M, Remme J, Hõrak R.
Mol Microbiol. 2016 May;100(4):719-34.
doi: 10.1111/mmi.13344.
2014
A conserved proline triplet in Val-tRNA synthetase and the origin of elongation factor P
Starosta AL, Lassak J, Peil L, Atkinson GC, Woolstenhulme CJ, Virumäe K, Buskirk A, Tenson T, Remme J, Jung K, Wilson DN.
Cell Rep. 2014 Oct 23;9(2):476-83.
doi: 10.1016/j.celrep.2014.09.008.
Translational stalling at polyproline stretches is modulated by the sequence context upstream of the stall site
Starosta AL, Lassak J, Peil L, Atkinson GC, Virumäe K, Tenson T, Remme J, Jung K, Wilson DN.
Nucleic Acids Res. 2014;42(16):10711-9.
doi: 10.1093/nar/gku768.
Stepwise splitting of ribosomal proteins from yeast ribosomes by LiCl
Piir K, Tamm T, Kisly I, Tammsalu T, Remme J.
PLoS One. 2014 Jul 3;9(7):e101561.
doi: 10.1371/journal.pone.0101561.
