{"id":8,"date":"2024-04-04T05:26:02","date_gmt":"2024-04-04T02:26:02","guid":{"rendered":"https:\/\/sisu.ut.ee\/ribolab\/publikatsioonid\/"},"modified":"2026-01-28T18:57:56","modified_gmt":"2026-01-28T16:57:56","slug":"publikatsioonid","status":"publish","type":"page","link":"https:\/\/sisu.ut.ee\/ribolab\/publikatsioonid\/","title":{"rendered":"PUBLIKATSIOONID"},"content":{"rendered":"
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2026<\/strong><\/p>\n<\/div>\n\n\n\n

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Hypoxia-induced ribosomal RNA modifications in the peptidyl-transferase center contribute to anaerobic growth of bacteria<\/a><\/strong>
Ishiguro K, Midorikawa K, Shigi N, Kimura S, Liiv A, Yokoyama T, Ito T, Shirouzu M, Remme J, Miyauchi K, Suzuki T
<\/span><\/span>Mol Cell. 2026 Jan 8;86(1):78-96.e10.
doi: <\/a>10.1016\/j.molcel.2025.11.018<\/a><\/p>\n<\/div>\n\n\n\n

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2025<\/strong><\/p>\n<\/div>\n\n\n\n

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In Vitro Reassociation Assay to Measure the Formation of 80S Ribosomal Particles Using Salt-washed Ribosomal Subunits<\/strong><\/a>
Hallik A, Veeremaa A, Tamm T
<\/span><\/span>J Vis Exp. 2025 Dec 16;(226)
doi: 10.3791\/69529<\/a><\/p>\n<\/div>\n\n\n\n

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Translon: a single term for translated regions<\/strong><\/a>
\u015awirski M. I, Baranov P et al<\/em>.
<\/span><\/span>Nat Methods. 2025 Oct;22(10):2002-2006.
doi: 10.1038\/s41592-025-02810-3.<\/a><\/p>\n<\/div>\n\n\n\n

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Mutations in ribosomal protein uS5 alter translation fidelity and mutagenesis in Pseudomonas putida<\/em><\/strong><\/a>
J\u00fcrgenstein K, Ilves H, Luha\u00e4\u00e4r C, Brauer A, Remme J, Kivisaar M.
<\/span><\/span>J Bacteriol. 2025 Nov 12:e0033425.
doi: 10.1128\/jb.00334-25<\/a><\/p>\n<\/div>\n\n\n\n

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2024<\/strong><\/p>\n<\/div>\n\n\n\n

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Ribosomal RNA modification enzymes stimulate large ribosome subunit assembly in E. coli<\/strong><\/a>
Ero R, Leppik M, Reier K, Liiv A, Remme J.
Nucleic Acids Res. 2024 Jun 24;52(11):6614-6628.<\/span><\/span>
doi: 10.1093\/nar\/gkae222.<\/a><\/p>\n<\/div>\n\n\n\n

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SILAC analysis of Escherichia coli proteome during progression of growth from exponential to prolonged stationary phase<\/strong><\/a>
Reier K, Liiv A, Remme J.
Microbiol Resour Announc. 2024 Jun 11;13(6):e0004224.<\/span><\/span>
doi: 10.1128\/mra.00042-24.<\/a><\/p>\n<\/div>\n\n\n\n

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Loss of Conserved rRNA Modifications in the Peptidyl Transferase Center Leads to Diminished Protein Synthesis and Cell Growth in Budding Yeast<\/strong><\/a><\/span><\/span>
Leppik M, Pomerants L, P\u00f5ldes A, Mihkelson P, Remme J, Tamm T.
Int J Mol Sci. 2024 May 10;25(10):5194.<\/span><\/span>
doi: 10.3390\/ijms25105194.<\/a><\/p>\n<\/div>\n\n\n\n

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Richness of yeast community associated with apple fruits in Estonia<\/strong><\/a>
Kristjuhan A, Kristjuhan K, Tamm T.
Heliyon. 2024 Mar 14;10(6):e27885.<\/span><\/span>
doi: 10.1016\/j.heliyon.2024.e27885.<\/a><\/p>\n\n\n\n

Translational impacts of enzymes that modify ribosomal RNA around the peptidyl transferase centre <\/strong><\/a>
Bao L, Liljeruhm J, Crespo Blanco R, Brandis G, Remme J, Forster AC.
RNA Biology\u00a021, 31-41.<\/span><\/span>
doi: 10.1080\/15476286.2024.2368305<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2023<\/strong><\/p>\n<\/div>\n\n\n\n

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Ribosome Protein Composition Mediates Translation during the Escherichia coli Stationary Phase<\/strong><\/a>
Reier K, Liiv A, Remme J.
Int J Mol Sci. 2023 Feb 4;24(4):3128.<\/span><\/span>
doi: 10.3390\/ijms24043128.<\/a><\/p>\n<\/div>\n\n\n\n

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Archaea\/eukaryote-specific ribosomal proteins \u2013 guardians of a complex structure<\/strong><\/a>
Kisly I, Tamm T.
Comput Struct Biotechnol J. 2023 Jan 27;21:1249-1261.<\/span><\/span>
doi: 10.1016\/j.csbj.2023.01.037.<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2022<\/strong><\/p>\n<\/div>\n\n\n\n

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A Conundrum of r-Protein Stability: Unbalanced Stoichiometry of r-Proteins during Stationary Phase in Escherichia coli<\/strong><\/a>
Reier K, Lahtvee PJ, Liiv A, Remme J.
mBio. 2022 Oct 26;13(5):e0187322.<\/span><\/span>
doi: 10.1128\/mbio.01873-22.<\/a><\/p>\n<\/div>\n\n\n\n

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Plasticity and conditional essentiality of modification enzymes for domain V of Escherichia coli 23S ribosomal RNA<\/strong><\/a>
Liljeruhm J, Leppik M, Bao L, Truu T, Calvo-Noriega M, Freyer NS, Liiv A, Wang J, Blanco RC, Ero R, Remme J, Forster AC.
RNA. 2022 Jun;28(6):796-807.<\/span><\/span>
doi: 10.1261\/rna.079096.121.<\/a><\/p>\n<\/div>\n\n\n\n

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Variance in translational fidelity of different bacterial species is affected by pseudouridines in the tRNA anticodon stem-loop<\/strong><\/a>
J\u00fcrgenstein K, Tagel M, Ilves H, Leppik M, Kivisaar M, Remme J.
RNA Biol. 2022 Jan;19(1):1050-1058.<\/span><\/span>
doi: 10.1080\/15476286.2022.2121447.<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2021<\/strong><\/p>\n<\/div>\n\n\n\n

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A mutation in the ribosomal protein uS12 reveals novel functions of its universally conserved PNSA loop<\/strong><\/a>
Datta M, Pillai M, Modak MJ, Liiv A, Khaja FT, Hussain T, Remme J, Varshney U.
Mol Microbiol. 2021 Jun;115(6):1292-1308.<\/span><\/span>
doi: 10.1111\/mmi.14675.<\/a><\/p>\n<\/div>\n\n\n\n

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Luciferase-based reporter system for in vitro evaluation of elongation rate and processivity of ribosomes<\/strong><\/a>
Kisly I, Kattel C, Remme J, Tamm T.
Nucleic Acids Res. 2021 Jun 4;49(10):e59.<\/span><\/span>
doi: 10.1093\/nar\/gkab121.<\/a><\/p>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n