{"id":6,"date":"2024-04-04T08:51:35","date_gmt":"2024-04-04T05:51:35","guid":{"rendered":"https:\/\/sisu.ut.ee\/eukaryome\/sintax\/"},"modified":"2025-11-24T13:54:53","modified_gmt":"2025-11-24T11:54:53","slug":"sintax","status":"publish","type":"page","link":"https:\/\/sisu.ut.ee\/eukaryome\/sintax\/","title":{"rendered":"SINTAX"},"content":{"rendered":"

Here are the FASTA file formats suitable for the SINTAX.<\/p>\n\n\n\n

Important note: For unzipping files in Windows, install\u00a07-Zip software<\/a>.<\/span> If you are working in HPC, use the P7zip package <\/a>to unzip the files.<\/strong><\/p>\n\n\n\n

\n
\n
Version<\/strong><\/td>\n

File name<\/strong><\/p>\n<\/td>

File size<\/strong><\/p><\/td>

Number of sequences<\/strong><\/td>Notes<\/strong><\/td><\/tr>
2.0<\/td>SINTAX_EUK_SSU<\/a><\/td>58.4 MB<\/td>353,797<\/td>Reference SSU sequences<\/td><\/tr>
2.0<\/td>SINTAX_EUK_LSU<\/a><\/td>62 MB<\/td>377,679<\/td>Reference LSU sequences<\/td><\/tr>
2.0<\/td>SINTAX_EUK_long<\/a><\/td>49 MB<\/td>193,705<\/td>Reference \u201cSSU-ITS-LSU\u201d sequences combined<\/td><\/tr>
2.0<\/td>SINTAX_EUK_ITS<\/a><\/td>106 MB<\/td>1,597,426<\/td>Reference ITS sequences<\/td><\/tr><\/tbody><\/table><\/figure>\n<\/div>\n<\/div>\n\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

Here are the FASTA file formats suitable for the SINTAX. Important note: For unzipping files in Windows, install\u00a07-Zip software. If you are working in HPC, use the P7zip package to unzip the files. Version File name File size Number of …<\/p>\n","protected":false},"author":163,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"inline_featured_image":false,"footnotes":""},"class_list":["post-6","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages\/6","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/users\/163"}],"replies":[{"embeddable":true,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/comments?post=6"}],"version-history":[{"count":30,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages\/6\/revisions"}],"predecessor-version":[{"id":851,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages\/6\/revisions\/851"}],"wp:attachment":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/media?parent=6"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}