{"id":4,"date":"2024-04-04T08:51:35","date_gmt":"2024-04-04T05:51:35","guid":{"rendered":"https:\/\/sisu.ut.ee\/eukaryome\/qiime2\/"},"modified":"2025-11-24T13:55:24","modified_gmt":"2025-11-24T11:55:24","slug":"qiime2","status":"publish","type":"page","link":"https:\/\/sisu.ut.ee\/eukaryome\/qiime2\/","title":{"rendered":"QIIME 2"},"content":{"rendered":"<p>The \u201c.zip\u201d files contain \u201c.fasta\u201d and \u201c.tsv\u201d files. The files can be downloaded by clicking on the hyperlinks in the following table. <\/p>\n\n\n\n<p><strong>Important <span style=\"margin: 0px; padding: 0px;\">note: For unzipping files in Windows, install\u00a0<a href=\"https:\/\/www.7-zip.org\/download.html\" target=\"_blank\">7-Zip software<\/a>.<\/span> If you are working in HPC, use the <a href=\"https:\/\/anaconda.org\/bioconda\/p7zip\" data-type=\"link\" data-id=\"https:\/\/anaconda.org\/bioconda\/p7zip\">P7zip package <\/a>to unzip the files.<\/strong><\/p>\n\n\n\n<figure class=\"wp-block-table is-style-stripes\"><table class=\"table table-hover\"><tbody><tr><td><strong>Version<\/strong><\/td><td><strong>\u00a0File name<\/strong><\/td><td><strong>File \u00a0size\u00a0<\/strong><\/td><td><strong>Number of sequences<\/strong><\/td><td><strong>Notes<\/strong><\/td><\/tr><tr><td>2.0<\/td><td><a href=\"https:\/\/sisu.ut.ee\/wp-content\/uploads\/sites\/643\/QIIME2_EUK_longread_v2.0.zip\" target=\"_blank\" rel=\"noreferrer noopener\">QIIME2_EUK_long<\/a><\/td><td>49 MB<\/td><td>193,705<\/td><td>Reference \u201cSSU-ITS-LSU\u201d sequences combined<\/td><\/tr><tr><td>2.0<\/td><td><a href=\"https:\/\/sisu.ut.ee\/wp-content\/uploads\/sites\/643\/QIIME2_EUK_ITS_v2.0.zip\" target=\"_blank\" rel=\"noreferrer noopener\">QIIME2_EUK_ITS<\/a><\/td><td>106 MB<\/td><td>1,597,426<\/td><td>Reference ITS sequences<\/td><\/tr><tr><td>2.0<\/td><td><a href=\"https:\/\/sisu.ut.ee\/wp-content\/uploads\/sites\/643\/QIIME2_EUK_SSU_v2.0.zip\" target=\"_blank\" rel=\"noreferrer noopener\">QIIME2_EUK_SSU<\/a><\/td><td>59.2 MB<\/td><td>353,797<\/td><td>Reference\u00a0SSU sequences<\/td><\/tr><tr><td>2.0<\/td><td><a href=\"https:\/\/sisu.ut.ee\/wp-content\/uploads\/sites\/643\/QIIME2_EUK_LSU_v2.0.zip\" target=\"_blank\" rel=\"noreferrer noopener\">QIIME2_EUK_LSU<\/a><\/td><td>62.9 MB<\/td><td>377,679<\/td><td>Reference LSU sequences<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>The \u201c.zip\u201d files contain \u201c.fasta\u201d and \u201c.tsv\u201d files. The files can be downloaded by clicking on the hyperlinks in the following table. Important note: For unzipping files in Windows, install\u00a07-Zip software. If you are working in HPC, use the P7zip &#8230;<\/p>\n","protected":false},"author":163,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"inline_featured_image":false,"footnotes":""},"class_list":["post-4","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages\/4","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/users\/163"}],"replies":[{"embeddable":true,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/comments?post=4"}],"version-history":[{"count":30,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages\/4\/revisions"}],"predecessor-version":[{"id":852,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages\/4\/revisions\/852"}],"wp:attachment":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/media?parent=4"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}