{"id":13,"date":"2024-04-04T08:51:36","date_gmt":"2024-04-04T05:51:36","guid":{"rendered":"https:\/\/sisu.ut.ee\/eukaryome\/blast\/"},"modified":"2025-11-24T13:52:55","modified_gmt":"2025-11-24T11:52:55","slug":"generalfasta","status":"publish","type":"page","link":"https:\/\/sisu.ut.ee\/eukaryome\/generalfasta\/","title":{"rendered":"General FASTA"},"content":{"rendered":"

The general FASTA releases may be used for taxonomy assignment via the BLAST and as a reference database for reference-based chimera filtering. The files can be downloaded by clicking on the hyperlinks in the following table.<\/span><\/span><\/span><\/span> <\/p>\n\n\n\n

Important note: For unzipping files in Windows install\u00a07-Zip software<\/a>.<\/span> If you are working in HPC, use the P7zip package <\/a>to unzip the files.<\/strong><\/p>\n\n\n\n\n\n

Version<\/span><\/span><\/span><\/span><\/strong><\/td>File name<\/span><\/span><\/span><\/span><\/strong><\/td>File size<\/span><\/span><\/span><\/span><\/strong><\/td>Number of sequences<\/span><\/span><\/span><\/span><\/strong><\/td>Notes<\/span><\/span><\/span><\/span><\/strong><\/td><\/tr>
2.0<\/td>General_EUK_long<\/a><\/span><\/span><\/span><\/span><\/td>49 MB<\/span><\/span><\/span><\/span><\/td>193,705<\/span><\/span><\/span><\/span><\/td>Reference \u201cSSU-ITS-LSU\u201d sequences combined<\/span><\/span><\/span><\/span><\/td><\/tr>
2.0<\/td>General_EUK_LSU<\/span><\/span><\/span><\/span><\/a><\/td>62 MB<\/span><\/span><\/span><\/span><\/td>377,679<\/span><\/span><\/span><\/span><\/td>Reference LSU sequences<\/span><\/span><\/span><\/span><\/td><\/tr>
2.0<\/td>General_EUK_SSU<\/span><\/span><\/span><\/span><\/a><\/td>58 MB<\/span><\/span><\/span><\/span><\/td>353,797<\/span><\/span><\/span><\/span><\/td>Reference <\/span><\/span><\/span><\/span>SSU sequences<\/span><\/span><\/span><\/span><\/td><\/tr>
2.0<\/td>General_EUK_ITS<\/span><\/span><\/span><\/span><\/a><\/td>106 MB<\/span><\/span><\/span><\/span><\/td>1,<\/span><\/span><\/span><\/span>597,427<\/td>Reference <\/span><\/span><\/span><\/span>\u00a0ITS sequences<\/span><\/span><\/span><\/span><\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

The general FASTA releases may be used for taxonomy assignment via the BLAST and as a reference database for reference-based chimera filtering. The files can be downloaded by clicking on the hyperlinks in the following table. Important note: For unzipping …<\/p>\n","protected":false},"author":163,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"inline_featured_image":false,"footnotes":""},"class_list":["post-13","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages\/13","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/users\/163"}],"replies":[{"embeddable":true,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/comments?post=13"}],"version-history":[{"count":30,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages\/13\/revisions"}],"predecessor-version":[{"id":848,"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/pages\/13\/revisions\/848"}],"wp:attachment":[{"href":"https:\/\/sisu.ut.ee\/eukaryome\/wp-json\/wp\/v2\/media?parent=13"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}